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Package: SCTORvalidation 0.4.5

Alan G Haynes

SCTORvalidation: Tools for assisting with package validation within the SCTO package validation projedct of the Statistics and Methodology platform

The validation platform consists of three GitHub repositories, one of which hosts this package. The others host tests for specific packages, and a location to reports the results of tests and validations. This package provides tools to work with that data.

Authors:Alan G. Haynes [cre]

SCTORvalidation_0.4.5.tar.gz
SCTORvalidation_0.4.5.zip(r-4.7)SCTORvalidation_0.4.5.zip(r-4.6)SCTORvalidation_0.4.5.zip(r-4.5)
SCTORvalidation_0.4.5.tgz(r-4.6-any)SCTORvalidation_0.4.5.tgz(r-4.5-any)
SCTORvalidation_0.4.5.tar.gz(r-4.7-any)SCTORvalidation_0.4.5.tar.gz(r-4.6-any)
SCTORvalidation_0.4.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SCTORvalidation/json (API)

# Install 'SCTORvalidation' in R:

install.packages('SCTORvalidation', repos = c('https://ctu-bern.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/swissclinicaltrialorganisation/sctorvalidation_rpackage/issues

On CRAN:

3.30 score 2 stars 9 scripts 39 exports 69 dependencies

Last updated from:2ef6d6c5d1. Checks:7 NOTE, 2 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	NOTE	157
source / vignettes	OK	144
linux-release-x86_64	NOTE	154
macos-release-arm64	NOTE	91
macos-oldrel-arm64	NOTE	133
windows-devel	NOTE	97
windows-release	NOTE	142
windows-oldrel	NOTE	90
wasm-release	OK	137

Exports:add_label check_session extract_functions_from_dir extract_functions_from_file find_pkgs gen_pkg_table gen_tests_table get_12month_downloads get_comments get_issue get_labels get_n_deps get_release_date get_test_data get_tested_pkgs get_tests get_valid_pkgs is_is_approved is_package is_test is_triage load_pkg_table load_tests_table parse_evidence_tab post_comment post_issue remove_label risk_hook sctopkg sctoreports sctotests test test_skeleton test_to_text update_issue update_pkg_table update_tests_table validate_pkg_issue

Dependencies:askpass bit bit64 brio cachem callr cli clipr conflicted cpp11 cranlogs crayon curl desc diffobj dplyr evaluate fastmap fs generics gitcreds glue highr hms httr httr2 ini jsonlite knitr lifecycle lubridate magrittr memoise mime openssl otel pillar pkgbuild pkgconfig pkgload pkgsearch praise prettyunits processx progress ps purrr R6 rappdirs readr rlang rprojroot sessioninfo stringi stringr sys testthat tibble tidyr tidyselect timechange tzdb utf8 vctrs vroom waldo withr xfun yaml

Contributing new tests

Rendered fromcontribute.Rmdusingknitr::rmarkdown

Last update: 2024-07-04
Started: 2024-03-13

Help page	Topics
Interact with the GitHub API to get or set issue information	add_label close_issue get_comments get_issue get_issues get_test_reports post_comment post_issue remove_label update_issue
Convert the text risk metric answers to numeric values and calculate a score	calculate_pkg_score
Check a sessions loaded packages against the risk assessed packages list from GitHub	check_session print.sctovalidity
Extract functions from R scripts within a directory	extract_functions_from_dir extract_functions_from_file
Determine which package a function is from	find_pkgs
Convert issues from to tables	gen_pkg_table gen_tests_table
Get number of downloads in the last 12 months	get_12month_downloads
Get the number of dependencies for a package	get_n_deps
Derive the location of a package's source code	get_pkg_source
Get the release date of a CRAN package	get_release_date
Download datasets from the SCTO validation tests repository	get_test_data
Get the list of packages that have tests in a repository	get_tested_pkgs
Get the list of validated packages from GitHub	get_valid_pkgs
Check whether an issue has a particular label	get_labels is_ is_approved is_package is_test is_triage
Load the flat file of validated packages from github	load_pkg_table load_tests_table
Convert test evidence table back to a data frame	parse_evidence_tab
Hook for collecting user-defined chunk risk level in markdown documents	risk_hook
SCTO repositories	sctopkg sctoreports sctotests
Run all tests for a given package	print.validate_result test
Add a new package skeleton	test_skeleton
Convert a test result object to a text string for posting to GitHub	test_to_text
Append new issue data to existing tables	update_pkg_table update_tests_table
Validate the inputs for package or function tests	validate_pkg_issue validate_test_issue

Package: SCTORvalidation 0.4.5

SCTORvalidation: Tools for assisting with package validation within the SCTO package validation projedct of the Statistics and Methodology platform

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