This package is considered a duplicate. The official version of this package is found at:https://swissclinicaltrialorganisation.r-universe.dev/secuTrialR

Package: secuTrialR 1.3.3

Alan G. Haynes

secuTrialR: Handling of Data from the Clinical Data Management System 'secuTrial'

Seamless and standardized interaction with data exported from the clinical data management system (CDMS) 'secuTrial'<https://www.secutrial.com>. The primary data export the package works with is a standard non-rectangular export.

Authors:Alan G. Haynes [cre, aut, cph], Patrick R. Wright [aut, cph], Milica Markovic [aut, cph], Gilles Dutilh [ctb], Armando Lenz [ctb], Pascal Benkert [com], Silvia Grieder [ctb], Pia Neuschwander [ctb], Constantin Sluka [ctb]

secuTrialR_1.3.3.tar.gz
secuTrialR_1.3.3.zip(r-4.7)secuTrialR_1.3.3.zip(r-4.6)secuTrialR_1.3.3.zip(r-4.5)
secuTrialR_1.3.3.tgz(r-4.6-any)secuTrialR_1.3.3.tgz(r-4.5-any)
secuTrialR_1.3.3.tar.gz(r-4.7-any)secuTrialR_1.3.3.tar.gz(r-4.6-any)
secuTrialR_1.3.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
secuTrialR/json (API)

# Install 'secuTrialR' in R:

install.packages('secuTrialR', repos = c('https://ctu-bern.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/swissclinicaltrialorganisation/secutrialr/issues

On CRAN:

5.71 score 10 stars 17 scripts 667 downloads 28 exports 37 dependencies

Last updated from:9583775b46. Checks:9 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	OK	193
source / vignettes	OK	210
linux-release-x86_64	OK	185
macos-release-arm64	OK	107
macos-oldrel-arm64	OK	132
windows-devel	OK	127
windows-release	OK	118
windows-oldrel	OK	134
wasm-release	OK	114

Exports:annual_recruitment build_secuTrial_url dates_secuTrial dictionary_secuTrial diff_secuTrial export_date export_datetime factorize_secuTrial form_status_counts form_status_summary get_participants label label_secuTrial label<-labels_secuTrial links_secuTrial plot_recruitment read_secuTrial read_secuTrial_raw read_validation_overview return_hidden_items return_random_participants return_scores subset_secuTrial units units<-visit_structure write_secuTrial

Dependencies:bit bit64 cellranger cli clipr cpp11 crayon dplyr forcats generics glue haven hms lifecycle lubridate magrittr pillar pkgconfig prettyunits progress purrr R6 readr readxl rematch rlang stringi stringr tibble tidyr tidyselect timechange tzdb utf8 vctrs vroom withr

secuTrialR - a walkthrough

Rendered fromsecuTrialR-package-vignette.Rmdusingknitr::rmarkdown

Last update: 2020-08-27
Started: 2019-03-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Returns a data.frame showing the annual recruitment per center	annual_recruitment
as.data.frame method for secuTrialdata objects Make the data from the exports more easily accessible by placing them in another environment (e.g. place them in the global environment ('.GlobalEnv') and you can reference them without referring to the 'secuTrialdata' object anymore. Ie. they become regular 'data.frame's).	as.data.frame.secuTrialdata
Asses completeness of data for each variable in a secuTrial export	assess_form_variable_completeness
Compose a secuTrial URL	build_secuTrial_url
Returns deviations from suggested export options	check_export_options
Methods to handle date(times)s in secuTrial exports	dates_secuTrial dates_secuTrial.secuTrialdata
Data dictionary for secuTrialdata objects	dictionary_secuTrial
Returns differences in the setup of two 'secuTrialdata' objects	diff_secuTrial
Return the date and time that an export was performed	export_date export_datetime
Add factors to 'secuTrialdata' objects	factorize factorize_secuTrial factorize_secuTrial.secuTrialdata
A function to assess the status of forms	form_status_counts
A function to show summary statistics for form statuses	form_status_summary
Retrieves participants present in 'secuTrialdata'	get_participants
Get variable labels for secuTrialdata objects	label label<- labels_secuTrial label_secuTrial units units<-
Show links between forms	links_secuTrial
Plots the recruitment over time for 'secuTrialdata' objects	plot_recruitment
Read secuTrial export	read_secuTrial
This function loads a multi-page secuTrial 'Validation Overview' report into an R tibble.	read_validation_overview
Returns hidden items (variables) from 'secuTrialdata' objects	return_hidden_items
Returns the random participants from a secuTrial export	return_random_participants
Returns the score (calculated) items from 'secuTrialdata' objects	return_scores
This function loads a secuTrial export	print.secuTrialdata read_secuTrial_raw secuTrialdata
Subsets a 'secuTrialdata' object	subset_secuTrial
Get the visit structure of 'secuTrialdata' objects	plot.secuTrialvisit visit_structure
Write secuTrial exports to other formats	write_secuTrial write_secuTrial.data.frame write_secuTrial.secuTrialdata